7626713532

Committed 23 Jan 2024 01:50PM UTC coverage: 90.222%. First build

Build # 7626713532

Build Type

Pull #359

github

Committed by

henrikstranneheim

Commit Message

Merge remote-tracking branch 'origin/rename-sars-cov-2-to-mutant' into rename-sars-cov-2-to-mutant

Pull Request Pull Request #359: feat(sql): Rename sars-cov-2 to mutant

Run Details

1624 of 1800 relevant lines covered (90.22%)

0.9 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

61.9

/trailblazer/clients/slurm_api_client/slurm_api_client.py

import requests

from trailblazer.clients.slurm_api_client.dto import (
    SlurmCancelJobResponse,
    SlurmJobResponse,
    SlurmJobsResponse,
)


class SlurmApiClient:
    def __init__(self, base_url: str, access_token: str, user_name: str) -> None:
        self.base_url = base_url
        self.headers = {"X-SLURM-USER-NAME": user_name, "X-SLURM-USER-TOKEN": access_token}

    def get_job(self, job_id: str) -> SlurmJobResponse:
        endpoint: str = f"{self.base_url}/slurmV0040/job/{job_id}"
        response = requests.get(endpoint, headers=self.headers)
        response.raise_for_status()
        return SlurmJobResponse.model_validate(response.json())

    def get_jobs(self) -> SlurmJobsResponse:
        endpoint: str = f"{self.base_url}/slurmV0040/jobs"
        response = requests.get(endpoint, headers=self.headers)
        response.raise_for_status()
        return SlurmJobsResponse.model_validate(response.json())

    def cancel_job(self, job_id: str) -> SlurmCancelJobResponse:
        endpoint: str = f"{self.base_url}/slurmV0040/job/{job_id}"
        response = requests.delete(endpoint, headers=self.headers)
        response.raise_for_status()
        return SlurmCancelJobResponse.model_validate(response.json())

1	import requests	1✔
2
3	from trailblazer.clients.slurm_api_client.dto import (	1✔
4	SlurmCancelJobResponse,
5	SlurmJobResponse,
6	SlurmJobsResponse,
7	)
8
9
10	class SlurmApiClient:	1✔
11	def __init__(self, base_url: str, access_token: str, user_name: str) -> None:	1✔
12	self.base_url = base_url	1✔
13	self.headers = {"X-SLURM-USER-NAME": user_name, "X-SLURM-USER-TOKEN": access_token}	1✔
14
15	def get_job(self, job_id: str) -> SlurmJobResponse:	1✔
16	endpoint: str = f"{self.base_url}/slurmV0040/job/{job_id}"	×
17	response = requests.get(endpoint, headers=self.headers)	×
18	response.raise_for_status()	×
19	return SlurmJobResponse.model_validate(response.json())	×
20
21	def get_jobs(self) -> SlurmJobsResponse:	1✔
22	endpoint: str = f"{self.base_url}/slurmV0040/jobs"	1✔
23	response = requests.get(endpoint, headers=self.headers)	1✔
24	response.raise_for_status()	1✔
25	return SlurmJobsResponse.model_validate(response.json())	1✔
26
27	def cancel_job(self, job_id: str) -> SlurmCancelJobResponse:	1✔
28	endpoint: str = f"{self.base_url}/slurmV0040/job/{job_id}"	×
29	response = requests.delete(endpoint, headers=self.headers)	×
30	response.raise_for_status()	×
31	return SlurmCancelJobResponse.model_validate(response.json())	×

Clinical-Genomics / trailblazer / 7626713532

Source File Press 'n' to go to next uncovered line, 'b' for previous

Source File
Press 'n' to go to next uncovered line, 'b' for previous