angelolab / toffy / 7480571521

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Add support for MIBI runs acquired using autogain feature (#455)

* Initial auto_detector testing

* Add support for auto detector normalization (same functionality as if < 10 obs for outlier detection)

* Add autogain flag to 4b notebook

* Document autogain for create_fitted_pulse_heights_file

* Correct min_obs threshold if autogain is True

* Move autogain setting to top of notebook, this is to be compatible with the detector plotting PR

* Update tests to pass normalize kwargs more correctly and add specific autogain vs non-autogain testing

* Fix dirname to join for autogain mph_run_dir

* Fix dirname call

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