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Added fix to io_utils.list_files function for instances where column … (#42)

* Added fix to io_utils.list_files function for instances where column numbers go past 0-9.

* forgot to add latest version of fix. now updated.

* Added double quotations for string in pattern search.

* Updated pre-commit

* Updated substr matching to account for a list of substrs

* Updated matches variable in list_files.

* Additionally updated list_folders substr matching with same fix in list_files.

* Changed list_files/folder substr to use set matching instead of pure pattern recogntion.

* Added a step to regex split to filter out empty tokens.

* Updated load_folders functionality to more closely match subsetting by strings.

* Add more encompassing test cases

* Fix formatting

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Co-authored-by: alex-l-kong <alkong@ucdavis.edu>

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