7194961165

Committed 13 Dec 2023 12:07PM UTC coverage: 56.776% (-0.2%) from 57.013%

Build # 7194961165

Build Type

push

github

Committed by

web-flow

Commit Message

Merge Latest Release into main (#1702)

* Bump YamlDotNet from 13.3.1 to 13.4.0

Bumps [YamlDotNet](https://github.com/aaubry/YamlDotNet) from 13.3.1 to 13.4.0.
- [Release notes](https://github.com/aaubry/YamlDotNet/releases)
- [Commits](https://github.com/aaubry/YamlDotNet/compare/v13.3.1...v13.4.0)

---
updated-dependencies:
- dependency-name: YamlDotNet
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

* Bump shogo82148/actions-setup-perl from 1.23.1 to 1.24.1

Bumps [shogo82148/actions-setup-perl](https://github.com/shogo82148/actions-setup-perl) from 1.23.1 to 1.24.1.
- [Release notes](https://github.com/shogo82148/actions-setup-perl/releases)
- [Commits](https://github.com/shogo82148/actions-setup-perl/compare/v1.23.1...v1.24.1)

---
updated-dependencies:
- dependency-name: shogo82148/actions-setup-perl
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

* fix checkbox issue

* improve confirmation text (#1639)

* improve confirmation text
* Loop tidyup, use var where possible

---------

Co-authored-by: jas88 <j.a.sutherland@dundee.ac.uk>

* correct typo in create logging sql (#1640)

* Feature/ci codescan (#1641)

* Move SecurityCodescan.VS2019 to run on Github CI alone, integrate results with CodeQL
* Remove SecurityCodescan from Packages.md, no longer used via Nuget

---------

Co-authored-by: James A Sutherland <j@sutherland.pw>

* hide source control when not available

* Remove old Plugin object bits, tidy up (#1636)

* Remove old Plugin object bits, tidy up

* Purge remaining bits of AllExpiredPluginsNode

* Fix plugin display name in tree

* Update CreateNewDataExtractionProjectUI.cs

Casting fix

* Feature/rdmp42 delete plugins (#1642)

* add ui plugin delete functionality

* Warning and inherita... (continued)

Run Details

10722 of 20351 branches covered (0.0%)

Branch coverage included in aggregate %.

215 of 789 new or added lines in 63 files covered. (27.25%)

39 existing lines in 16 files now uncovered.

30650 of 52518 relevant lines covered (58.36%)

7294.17 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

0.0

/Rdmp.Core/CommandExecution/AtomicCommands/ExecuteCommandExportDatabaseToDir.cs

// Copyright (c) The University of Dundee 2018-2023
// This file is part of the Research Data Management Platform (RDMP).
// RDMP is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
// RDMP is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
// You should have received a copy of the GNU General Public License along with RDMP. If not, see <https://www.gnu.org/licenses/>.

using System;
using System.Collections.Generic;
using System.IO;
using System.Linq;
using System.Linq.Expressions;
using Rdmp.Core.Curation.Data;
using Rdmp.Core.Repositories;

namespace Rdmp.Core.CommandExecution.AtomicCommands;

// Dump all compatible objects from the current platform database(s) into a
// YAML/JSON directory for SQL-free operation.
public class ExecuteCommandExportDatabaseToDir : BasicCommandExecution
{
    private readonly IBasicActivateItems _activator;
    private readonly DirectoryInfo _target;

    public ExecuteCommandExportDatabaseToDir(IBasicActivateItems activator, [DemandsInitialization("Where the platform directory should be created")] string target)
    {
        _target = new DirectoryInfo(target);
        _activator = activator;
    }

    private readonly List<string> ignoreList = new() { "Rdmp.Core.DataQualityEngine.Data.DQEGraphAnnotation", "Rdmp.Core.DataQualityEngine.Data.Evaluation" };

    public override void Execute()
    {
        base.Execute();
        var repo = new YamlRepository(_target);
        foreach (var t in repo.GetCompatibleTypes())
        {
            if (ignoreList.Contains(t.FullName)) continue;
            try
            {
                Console.WriteLine(t.FullName);
                foreach (var o in _activator.GetRepositoryFor(t).GetAllObjects(t))
                    repo.SaveToDatabase(o);
            }
            catch(Exception)
            {
                Console.WriteLine($"Unable to find repo for {t.FullName}");
            }

        }
    }
}

1	// Copyright (c) The University of Dundee 2018-2023
2	// This file is part of the Research Data Management Platform (RDMP).
3	// RDMP is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
4	// RDMP is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
5	// You should have received a copy of the GNU General Public License along with RDMP. If not, see <https://www.gnu.org/licenses/>.
6
7	using System;
8	using System.Collections.Generic;
9	using System.IO;
10	using System.Linq;
11	using System.Linq.Expressions;
12	using Rdmp.Core.Curation.Data;
13	using Rdmp.Core.Repositories;
14
15	namespace Rdmp.Core.CommandExecution.AtomicCommands;
16
17	// Dump all compatible objects from the current platform database(s) into a
18	// YAML/JSON directory for SQL-free operation.
19	public class ExecuteCommandExportDatabaseToDir : BasicCommandExecution
20	{
21	private readonly IBasicActivateItems _activator;
22	private readonly DirectoryInfo _target;
23
NEW 24	public ExecuteCommandExportDatabaseToDir(IBasicActivateItems activator, [DemandsInitialization("Where the platform directory should be created")] string target)	×
25	{
NEW 26	_target = new DirectoryInfo(target);	×
NEW 27	_activator = activator;	×
NEW 28	}	×
29
NEW 30	private readonly List<string> ignoreList = new() { "Rdmp.Core.DataQualityEngine.Data.DQEGraphAnnotation", "Rdmp.Core.DataQualityEngine.Data.Evaluation" };	×
31
32	public override void Execute()
33	{
NEW 34	base.Execute();	×
NEW 35	var repo = new YamlRepository(_target);	×
NEW 36	foreach (var t in repo.GetCompatibleTypes())	×
37	{
NEW 38	if (ignoreList.Contains(t.FullName)) continue;	×
39	try
40	{
NEW 41	Console.WriteLine(t.FullName);	×
NEW 42	foreach (var o in _activator.GetRepositoryFor(t).GetAllObjects(t))	×
NEW 43	repo.SaveToDatabase(o);	×
NEW 44	}	×
NEW 45	catch(Exception)	×
46	{
NEW 47	Console.WriteLine($"Unable to find repo for {t.FullName}");	×
NEW 48	}	×
49
50	}
NEW 51	}	×
52	}

HicServices / RDMP / 7194961165

Source File Press 'n' to go to next uncovered line, 'b' for previous

Source File
Press 'n' to go to next uncovered line, 'b' for previous