• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

exoplanet-dev / celerite2 / 6739851294
78%

Build:
DEFAULT BRANCH: main
Ran 03 Nov 2023 12:44AM UTC
Jobs 5
Files 18
Run time 2s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

03 Nov 2023 12:39AM UTC coverage: 90.789% (+21.2%) from 69.607%
6739851294

push

github

web-flow
Add support for PyMC v5 (and fix some recent Jax issues) (#91)

* import ShapedArray from core instead of abstract_arrays

* Use `xla_client.register_custom_call_target()` instead of deprecated `register_cpu_custom_call_target()`

Ref: https://github.com/google/jax/issues/17662

* pymc4 -> pymc and aesara -> pytensor

* Update from `DeviceArray` to `jax.Array`

Ref: https://jax.readthedocs.io/en/latest/jax_array_migration.html

* Implement `_supp_shape_from_params()` for `CeleriteNormalRV`

There use to be a default implementation of this but it has been removed.
Implemented using a reference parameter, as is done for most distributions.

* Replace deprecated `model.test_point` by `model.initial_point()`

* Use time as reference parameter for `CeleriteNormalRV`

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Move `pymc4.rst` to `pymc.rst` in docs

* Replace aesara_jax_fn by pytensor_jax_fn in test_pymc_ops.py

* Replace pymc4 by pymc in API docs

* Replace pymc4 by pymc in first.ipynb

* Replace pymc4 by pymc in workflows and noxfile

* PyMC3 -> PyMC in Getting Started (first.ipynb) tutorial PSD figure

* Uncomment pymc and pymc_jax Github workflows

Were commented because of errors with PyMC v4

* Remove warning filters when running PyMC sampling in Getting Started tutorial

* Upper limit on xarray version for PyMC3

* Comment `pytensor.config.compute_test_value = "raise"` for now

Requires a fix in PyMC. Introduced to main by PR #6982, commit 714b4a, will probably be in v5.9.2.

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Dan Foreman-Mackey <dfm@dfm.io>

297 of 379 branches covered (0.0%)

Branch coverage included in aggregate %.

130 of 132 new or added lines in 6 files covered. (98.48%)

1970 of 2118 relevant lines covered (93.01%)

1.95 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
48.84
python/celerite2/pymc/distribution.py
Jobs
ID Job ID Ran Files Coverage
1 ubuntu-latest-core-3.10 - 6739851294.1 03 Nov 2023 01:03AM UTC 18
24.53
2 ubuntu-latest-jax-3.10 - 6739851294.2 03 Nov 2023 01:03AM UTC 18
50.27
3 ubuntu-latest-pymc_jax-3.10 - 6739851294.3 03 Nov 2023 01:03AM UTC 18
28.45
4 ubuntu-latest-pymc-3.10 - 6739851294.4 03 Nov 2023 01:03AM UTC 18
51.12
5 ubuntu-latest-pymc3-3.10 - 6739851294.5 03 Nov 2023 01:03AM UTC 18
48.88
Source Files on build 6739851294
  • Tree
  • List 18
  • Changed 1
  • Source Changed 0
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line Branch Hits Branch Misses
  • Back to Repo
  • 7feb2e33 on github
  • Prev Build on main (#6221762322)
  • Next Build on main (#6935989093)
  • Delete
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc