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BlueBrain / libsonata / 6719124249
94%
master: 94%

Build:
Build:
LAST BUILD BRANCH: double-ctest
DEFAULT BRANCH: master
Ran 01 Nov 2023 11:34AM UTC
Jobs 1
Files 14
Run time 1s
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01 Nov 2023 11:32AM UTC coverage: 93.976% (+0.09%) from 93.886%
6719124249

Pull #298

github

1uc
Implement merge-read-extract.

Reading from parallel filesystems, e.g. GPFS, requires reading few but
large chunks. Reading multiple times from the same block/page, come with
a hefty performance penalty.

The commit implements the functionality for merging nearby reads by
adding or modifying:

  * `sortAndMerge` to allow merging ranges across gaps of a certain
    size.

  * `bulkRead` to read block-by-block and extract the requested slices
    in memory.

  * `_readSelection` to always combine reads.

  * `?fferent_edges` to optimize reading of edge IDs.

It requires a compile-time constant `SONATA_PAGESIZE` to specify the
block/pagesize to be targeted.
Pull Request #298: Optimize loading `?fferent_edges`.

84 of 84 new or added lines in 3 files covered. (100.0%)

1872 of 1992 relevant lines covered (93.98%)

77.9 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
96.49
src/read_bulk.hpp
Jobs
ID Job ID Ran Files Coverage
1 6719124249.1 01 Nov 2023 11:34AM UTC 14
93.98
GitHub Action Run
Source Files on build 6719124249
  • Tree
  • List 14
  • Changed 4
  • Source Changed 0
  • Coverage Changed 3
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
  • Back to Repo
  • Pull Request #298
  • PR Base - master (#6585155895)
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