angelolab / toffy / 6031492165

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Check for missing fovs after run is complete (#410)

* check for missing fov files

* watcher check

* kawrgs

* basename fix

* warning instead of error

* add warning watcher test

* warning test for json_utils

* skip moly

* remove watcher tests

* separate watcher test

* test on existing data

* watcher notebook

* moly fix

* Au in panel

* fix merge fail

* fix merge fail 2.0

* fix poetry file

* timeout for file generation

* overall timeout arg

* notebook update

* remove duplicate cell

* print fov run stopped on

* notebook updates

1364 of 1492 branches covered (0.0%)

Branch coverage included in aggregate %.

47 of 47 new or added lines in 3 files covered. (100.0%)

2678 of 2907 relevant lines covered (92.12%)

0.92 hits per line