1999
87%

Ran 16 May 2016 02:29PM UTC

Jobs 6

Files 169

Run time 13min

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Build # 1999

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push

travis-ci

Committed by Martin K. Scherer

Commit Message

Save traj file handling (#803)

If a reader has to be constructed within coordinates.save_traj(s), we only pass the file names actually needed to extract frames from to the reader. This fixes #788 (index unneeded files).

Involved changes:
* [featurereader] added option to return plain mdtraj.Trajectory objects
* [fragmentedreader] added reader_by_filename property
* [coor/api] handle chunk_size argument correctly (0 evaluates to False).
* default chunksize 1000
* [patches] added setitem method for Trajectory objs
* [reader_utils] def chunksize=1000, added setitem method for empty_traj created objs.
* [fragreader] use setitem method for traj objects collected by underlying featurereaders
* [datasource] handle too large RA indices for stride
* added create_traj in test.util.

Run Details

12715 of 14742 relevant lines covered (86.25%)

5.16 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	1999.1 (python=2.7 CONDA_PY=27 CONDA_NPY=19)	16 May 2016 02:29PM UTC	86.03	Travis Job 1999.1
2	1999.2 (python=2.7 CONDA_PY=27 CONDA_NPY=110)	16 May 2016 02:29PM UTC	86.03	Travis Job 1999.2
3	1999.3 (python=3.4 CONDA_PY=34 CONDA_NPY=19)	16 May 2016 02:34PM UTC	85.98	Travis Job 1999.3
4	1999.4 (python=3.5 CONDA_PY=35 CONDA_NPY=110)	16 May 2016 02:32PM UTC	85.98	Travis Job 1999.4
5	1999.5 (python=2.7 CONDA_PY=27 CONDA_NPY=110)	16 May 2016 02:35PM UTC	86.03	Travis Job 1999.5
6	1999.6 (python=3.5 CONDA_PY=35 CONDA_NPY=110)	16 May 2016 02:43PM UTC	85.98	Travis Job 1999.6

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