angelolab / toffy / 5614581138

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QC for TMAs and Control Samples (#358)

* added QC TMA logic

* python 3.11?

* fixed type hints, python3.8 default

* undid variable name change

* removed unused imports + sorted used imports

* typo

* itertools.product is very cool

* figure formatting fix

* poetry lock file fix

* small fix

* refactored code, refactored tests, added notebook

* fixed nb 3c qc_metrics_plots import

* small documentation fixes

* requested changes pt. 1

* poetry lock update

* made requested changes, cleaned up code

* notebook adjustments

* colormap fix, adjusted ranking and csv filtering

* replaced qc_tma image

* updated notebook, batch -> longitudinal

* added units, fixed some documentation

* plotting and notebook adjustments

* more small adjustments

1263 of 1385 branches covered (91.19%)

Branch coverage included in aggregate %.

235 of 235 new or added lines in 3 files covered. (100.0%)

2446 of 2669 relevant lines covered (91.64%)

0.92 hits per line