griffithlab / pVACtools / 5490341613
83%
master: 83%

LAST BUILD BRANCH: pvacvector
DEFAULT BRANCH: master
Ran
Jobs 5
Files 101
Run time 2s
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5490341613

Pull #911

github

web-flow 
Merge ebb56f925 into 5a5542032
Pull Request #911: Add new pVACsplice tool

1021 of 1021 new or added lines in 25 files covered. (100.0%)

6067 of 7890 relevant lines covered (76.89%)

3.84 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
88.37
 -0.03% pvactools/lib/calculate_reference_proteome_similarity.py
1
97.92
 pvactools/lib/filter_regtools_results.py
2
95.12
 pvactools/lib/combine_inputs.py
2
90.91
 pvactools/lib/load_gtf_data.py
2
0.0
 pvactools/tools/pvacsplice/__init__.py
5
94.05
 pvactools/lib/fasta_to_kmers.py
5
84.38
 -15.63% pvactools/lib/sort.py
6
79.6
 -0.05% pvactools/tools/pvacvector/run.py
10
0.0
 pvactools/lib/load_ensembl_data.py
11
86.03
 -5.58% pvactools/lib/post_processor.py
11
87.83
 -12.17% pvactools/lib/run_argument_parser.py
14
85.48
 -2.06% pvactools/lib/pipeline.py
14
0.0
 pvactools/tools/pvacsplice/gtf_to_tsv.py
16
86.02
 -2.23% pvactools/lib/aggregate_all_epitopes.py
23
82.13
 -7.7% pvactools/lib/top_score_filter.py
25
0.0
 pvactools/tools/pvacsplice/main.py
26
80.3
 pvactools/lib/junction_to_fasta.py
27
0.0
 pvactools/lib/print_log.py
68
81.7
 -8.63% pvactools/lib/output_parser.py
95
72.2
 -14.83% pvactools/lib/input_file_converter.py
129
0.0
 pvactools/lib/splice_pipeline.py
141
0.0
 pvactools/tools/pvacsplice/run.py

Uncovered Existing Lines

Lines Coverage ∆ File
3
87.83
 -12.17% pvactools/lib/run_argument_parser.py
Jobs
ID Job ID Ran Files Coverage
1 5490341613.1 101
77.06
2 5490341613.2 101
76.86
3 5490341613.3 101
77.08
4 5490341613.4 101
77.06
5 5490341613.5 101
77.08
Source Files on build 5490341613