BioJulia / Bio.jl / 1346
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Ward9250 
Indexes (#161)

* Added indexing types to a module Bio.Indexing

* Reorganised util folder a bit, and added the indexing structures I was working on for Genotype Count Arrays.

* Corrected error in test path

* Util tests come first

* Added first batch of tests for SingleIndex

* Added some manipulation tests and implemented Kenta's AbstractVector suggestion.

* Added some tests of the non-mutating rename methods

* Added getindex tests

* Corrected tests for getindex

* Removed multiline multiple &&'s in test suite

* Added brackets to rename tests

* Combined SingleIndex and GroupInder into one Indexer type

* Added new tests for constructors

* Fixed constructor issue

* Edited tests

* Fixed indexer constructors

* Corrected constructor tests

* corrected basic operators tests

* Finished modifying renaming tests and getindex tests

* Fixed a bug in names! which was flagged by a test error

* Fixed bug in rename! flagged up by test suite

* Fixed second bug in rename function flagged up in tests

* Corrected a renaming test

* Deleted test that's no longer applicable

* Added method for indexing into single indexes with signed integers

* Corrected some getindex tests

* Fixed a method error that was flagged by test suite

* Added method for getindex that was shown by tests to be lacking

* Removed restriction that an indexer only indexes unsigned values, because there may be abstract datastructures and concepts where negative indicies are a valid thing, and so you might want to index them by name

* Corrected a test because of previous change to indexers

* Added docstrings to all Indexer constructors.

* Added docstrings to rename methods.

* Implemented some suggested code improvements.

* Refactored tests for construction checks, and basic operators

* Implemented fixes suggested by Kenta.

* Updated docstrings to fit julia guidelines.

3550 of 4329 relevant lines covered (82.01%)

2185779.92 hits per line

Jobs
ID Job ID Ran Files Coverage
1 1346.1 0
81.94
 Travis Job 1346.1
3 1346.3 0
82.01
 Travis Job 1346.3
Source Files on build 1346
Detailed source file information is not available for this build.