neurobagel / bagel-cli / 5280588353

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[FIX] Schema: allow for data dictionaries with incomplete Neurobagel annotations (#163)

* skip columns without annotations

- required now that the schema makes annotations optional

* Introduce get_annotated_columns

* Refactor get_annotated_columns to return column name and content

* Refactor utils to use only annotated columns

* Update test data description

* add check + test that no annotated columns in data dict raises error

* add check + test that >=1 column about participant ID

* add example with participant ID column lacking neurobagel annotations

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Co-authored-by: Alyssa Dai <alyssa.ydai@gmail.com>

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