angelolab / toffy / 2157

92%

push

travis-ci-com

Add ability to override run callbacks to process per FOV (#313)

* Support intermediate callbacks for build step

* Add intermediate callback params to notebook

* Add intermediate callback functionality to fov_watcher

* PYCODESTYLE

* Add inter callbacks to fov watcher test cases

* Ensure inter_cbs passed to fov_watcher test

* Add replace parameter to intermediate callback test

* Testing

* Swap order of run callbacks and intermediate callbacks

* added runcallbacks plot refresh on new FOV

* set matplotlib backend to agg

* agg only on mac

* removed threading debug import

* swapped cbs and ibs in case_inter_callback

* build_callbacks in test_watcher fix

* clear plot in `fov_watcher.FOV_EventHandler.on_created`

* remove plt clear in watcher_callbacks

* removed fig.show()

* removed plot clearing

* show plot in on_created

* set fig to _

* save plots

* save plots

* removed plot_dir argument

* barplot -> catplot

* removed misc plt.show()

* directly save the qc_metric figure

* do not use dark_background

* Fix intermediate callback tests

* visualize_qc_metrics adjustments

* updated a test

* visualize qc_metrics arg fix

* removed commented line

---------

Co-authored-by: Sricharan Reddy Varra <srivarra@stanford.edu>

44 of 44 new or added lines in 4 files covered. (100.0%)

2102 of 2315 relevant lines covered (90.8%)

0.91 hits per line