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Integrate `pyFlowSOM` with Pixie (#863)

* pyFlowSOM requirement added, SOM cluster classes implemented, and pixel clustering class test passing

* Initial implementation of pyFlowSOM helper classes with testing

* Remove unnecessary yield for PixieConsensusCluster testing

* Mock up pyFlowSOM in RTD

* PYCODESTYLE whitespace fixes

* Make sure a different fixture is used for the pixel and cell pyFlowSOM tests

* PYCODESTYLE fixes in cluster_helpers_test.py

* New line to prevent line to long

* Implement pixel_cluster_utils API framework to pyFlowSOM

* Implement cell_cluster_utils API framework to pyFlowSOM (sans cluster_cells test)

* Update cell clustering with test for cluster_cells

* Pixel clustering notebook integrated with pyFlowSOM

* Remove unneeded args from pixel clustering notebook

* Cell clustering notebook integrated with pyFlowSOM

* RTD fix for cluster_pixels

* Another doc fix for run_pixel_som_assignment

* Add print out statements for progress reporting

* Remove cell clustering R files

* Ensure SOM runs deterministically, hand off process to PixieSOMCluster

* Positioning OCD

* Remove R dependencies from Dockerfile

* Implement block SOM cluster assignment logic

* Address loose ends of merge conflict

* Added num_passes arg to som training

* Add a comma after rlen

* Address review comments on cell clustering normalization and comments

* Allow pixel and cell SOM clustering and cluster assignment to run in notebook tests, remove mock file generation

* Remove unneeded helper functions for notebooks_test.py

* Remove extra comment from Dockerfile

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