int-brain-lab / ibllib / 3791669797219530
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3791669797219530

Pull #544

coverage/UCL

Mayo Faulkner 
Merge branch 'camlog_fix' into atlas_features
Pull Request #544: Atlas features

55 of 55 new or added lines in 4 files covered. (100.0%)

2536 of 17632 relevant lines covered (14.38%)

0.14 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
12.5
 -63.59% brainbox/io/spikeglx.py
4
11.36
 -70.18% ibllib/qc/camera.py
5
4.69
 -63.86% ibllib/plots/figures.py
43
3.93
 -69.71% brainbox/behavior/training.py

Uncovered Existing Lines

Lines Coverage ∆ File
3
36.36
 -13.64% ibllib/misc/misc.py
8
8.16
 -3.27% brainbox/plot.py
9
33.33
 -50.0% brainbox/core.py
9
33.33
 -27.27% ibllib/io/extractors/opto_trials.py
9
40.91
 -40.91% ibllib/atlas/genes.py
11
25.0
 -22.92% ibllib/io/globus.py
13
23.53
 -76.47% ibllib/io/misc.py
13
9.36
 -6.4% brainbox/population/cca.py
14
57.14
 -40.0% ibllib/pipes/audio_tasks.py
19
9.57
 -10.11% ibllib/atlas/plots.py
21
24.09
 -9.55% ibllib/oneibl/data_handlers.py
22
20.69
 -75.86% brainbox/video.py
22
13.16
 -58.64% ibllib/pipes/photometry_tasks.py
23
22.58
 -74.19% ibllib/time.py
24
21.88
 -75.0% ibllib/io/ffmpeg.py
28
12.5
 -87.5% brainbox/metrics/electrode_drift.py
29
23.08
 -74.36% ibllib/io/extractors/bpod_trials.py
30
15.07
 -41.1% ibllib/io/raw_daq_loaders.py
30
24.3
 -10.56% ibllib/oneibl/patcher.py
32
10.74
 -21.48% ibllib/plots/misc.py
34
12.78
 -25.56% ibllib/io/flags.py
36
23.08
 -69.23% ibllib/io/extractors/habituation_trials.py
36
38.68
 -33.96% ibllib/pipes/widefield_tasks.py
38
21.43
 -67.86% ibllib/pipes/transfer_rig_data.py
49
12.12
 -74.24% brainbox/singlecell.py
51
35.29
 -60.0% ibllib/pipes/sync_tasks.py
51
15.87
 -80.95% ibllib/pipes/scan_fix_passive_files.py
52
20.95
 -49.52% ibllib/io/extractors/training_audio.py
57
19.57
 -61.96% ibllib/qc/critical_reasons.py
58
9.76
 -47.15% brainbox/processing.py
60
32.98
 -63.83% ibllib/io/extractors/biased_trials.py
61
42.24
 -52.59% ibllib/pipes/video_tasks.py
63
12.94
 -74.12% brainbox/behavior/pyschofit.py
63
7.69
 -25.51% brainbox/ephys_plots.py
65
9.15
 -45.77% ibllib/pipes/local_server.py
67
32.04
 -65.05% ibllib/pipes/base_tasks.py
72
6.83
 -44.72% brainbox/task/trials.py
73
8.64
 -22.53% ibllib/pipes/histology.py
74
21.95
 -45.12% ibllib/plots/snapshot.py
74
12.5
 -63.59% brainbox/io/spikeglx.py
75
24.11
 -66.96% ibllib/io/extractors/widefield.py
76
25.45
 -69.09% ibllib/io/extractors/fibrephotometry.py
77
3.66
 -93.93% ibllib/pipes/training_preprocessing.py
79
23.08
 -67.52% ibllib/qc/base.py
81
15.83
 -67.5% ibllib/ephys/spikes.py
87
18.02
 -78.38% ibllib/qc/task_extractors.py
88
7.84
 -86.27% brainbox/task/passive.py
90
19.66
 -76.92% ibllib/io/video.py
93
14.17
 -38.75% brainbox/metrics/single_units.py
93
19.4
 -69.4% ibllib/io/session_params.py
95
21.77
 -64.63% ibllib/io/extractors/base.py
106
12.61
 -46.09% ibllib/io/extractors/video_motion.py
108
13.95
 -50.23% ibllib/pipes/ephys_alignment.py
109
5.84
 -79.56% ibllib/pipes/behavior_tasks.py
110
13.69
 -65.48% brainbox/behavior/wheel.py
111
13.02
 -65.68% brainbox/population/decode.py
129
11.76
 -75.88% ibllib/ephys/sync_probes.py
129
10.92
 -56.33% ibllib/qc/alignment_qc.py
131
12.58
 -82.39% ibllib/atlas/flatmaps.py
131
18.24
 -77.06% ibllib/qc/dlc.py
132
10.56
 -73.33% brainbox/task/closed_loop.py
151
3.59
 -90.42% ibllib/pipes/dynamic_pipeline.py
158
17.71
 -54.86% brainbox/plot_base.py
162
27.69
 -66.94% ibllib/atlas/regions.py
163
12.33
 -74.43% ibllib/io/extractors/training_wheel.py
165
13.96
 -53.57% ibllib/ephys/ephysqc.py
173
13.79
 -59.66% ibllib/io/extractors/ephys_passive.py
177
3.93
 -69.71% brainbox/behavior/training.py
206
12.76
 -71.03% brainbox/behavior/dlc.py
224
18.69
 -38.75% brainbox/io/one.py
232
32.11
 -60.57% ibllib/io/extractors/training_trials.py
240
4.17
 -53.1% ibllib/pipes/ephys_tasks.py
243
11.56
 -70.23% ibllib/oneibl/registration.py
247
29.12
 -37.65% ibllib/atlas/atlas.py
259
11.78
 -70.96% ibllib/io/raw_data_loaders.py
262
16.07
 -78.05% ibllib/io/extractors/ephys_fpga.py
264
19.01
 -68.75% ibllib/pipes/tasks.py
295
10.34
 -45.52% ibllib/pipes/misc.py
298
18.8
 -77.81% ibllib/qc/task_metrics.py
302
10.95
 -87.03% ibllib/io/extractors/camera.py
323
4.69
 -63.86% ibllib/plots/figures.py
400
11.36
 -70.18% ibllib/qc/camera.py
410
2.03
 -92.34% ibllib/pipes/training_status.py
563
2.8
 -75.24% ibllib/pipes/ephys_preprocessing.py
Jobs
ID Job ID Ran Files Coverage
1 Integration - 3791669797219530.1 118
14.38
Source Files on build 3791669797219530