7141
95%
master: 94%

Ran 11 Nov 2022 03:29AM UTC

Jobs 1

Files 37

Run time 2s

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Build # 7141

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Rename `_feature_0` to `_whole_cell` and `_feature_1` to `_nuclear` (#786)

* Initial commit of replacing _feature_0 with _whole_cell and _feature_1 with _nuclear

* Make sure dataset tests include _whole_cell and _nuclear

* Update distance matrix column to be dist_whole_cell

* Patch up marker quantification loading

* Ensure channels for stitch_images test are being passed in correctly

* Rename segmentation label saving to _whole_cell and _nuclear

* Define both the whole cell and nuclear suffix renaming choices for create_deepcell_output

* Change revision to match current PR on HuggingFace with new suffix names

* Patch up calc_dist_matrix suffix

* PYCODESTYLE in data_utils.py

* Patch up deepcell_utils

* Use new HuggingFace commit hash without hidden old files

* Change legacy example_dataset extensions to _whole_cell.tiff

* Make sure neighborhood mask uses _whole_cell.tiff

* Update comment to _whole_cell.tiff too

* Aesthetics

* Patch _feature_0 to _whole_cell to pass neighborhood mask generation test

* Change suffix in the README

* Refer to main branch for HuggingFace

Run Details

3128 of 3360 relevant lines covered (93.1%)

0.93 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	7141.1 (MPLBACKEND=Agg)	11 Nov 2022 03:30AM UTC	0	93.1	Travis Job 7141.1

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angelolab / ark-analysis / 7141
95%
master: 94%

README BADGES
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