angelolab / ark-analysis / 6983

95%

master: 94%

push

travis-ci-com

Standardize usage of `.tiff` extension (#801)

* Start conversion to .tiff extension

* Change revision hash to reflect new data download

* Update the HuggingFace hash

* Remove .tif extension in pixel clustering notebook

* Fix .tif to .tiff extensions in tests (part I)

* Fix .tif to .tiff extensions in tests (part II)

* Fix .tif to .tiff extensions in tests (part III)

* Documentation-related tiff fixes

* Simplify .tiff extension

* Clarify comment about DeepCell .tif saving

* Clarify that deepcell input files are now tiff

* Remove .tif support for load_imgs_from_dir and load_imgs_from_tree

* Remove MIBItiff .tif assumption

* Change .tif extension in example_dataset

* Remove old .tif channel files

* Delete repo example_dataset files no longer needed (thank you HuggingFace)

* Re-add mibitiff_inputs folder back (needed to test backwards compatibility for load_imgs_from_mibitiff)

* Change tiff_utils test to ensure input_data is no longer used

* Change HuggingFace revision back to main

19 of 19 new or added lines in 8 files covered. (100.0%)

3123 of 3358 relevant lines covered (93.0%)

0.93 hits per line