angelolab / ark-analysis / 6804

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Image tiling script (#702)

* load_tiled function working

* documentation

* helper function tests

* test cleanup and return_dims arg

* stitch_tiled working

* pycodestyle

* get_max_img_size substring issue

* docstring

* docstring 2

* docstring 2

* specific errors in load_tiled

* error logic

* run name in folder adjustment

* R.*C.* name check

* expected_fovs run name logic

* comments and clean

* tiled folder created in parent dir

* notebook

* works with tif

* clean and previous stitched_images compatibilty

* clean

* one channel load

* helper prefix function

* notebook update

* pycodestyle

* add functionality for single directory image stitching

* notebook update and arg names

* fix tests

* _write_tifs erros

* small tweaks

* cleaning

* remove max_img_size functionality

* clean notebook

* edit notebook paths

* remove get_max_img_size

* notebook documentation

* merge resolve

* faux paths

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