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Example Dataset - Notebook 2 (#736)

* nb1 dataset download test fixed. Added new tests

* dataset tests: nb2 support

* dataset works for nb1

* pycodestyle

* nb2: notebook tests fix

* nb2: notebook tests fix part 2

* docs build fix

* removed deprecated dataset test

* moved example dataset into it's own respective file and test file

* moved example dataset into it's own respective file and test file

* added tests for checking if a directory is empty or not

* temporary start_docker.sh adjustments

* adjusted notebook 2

* dataset auth_token=False

* pycodestyle

* updated revision, updated dataset config naming scheme

* Nuclear mask, CD163

* updated dataset commit hash.

* adjust test params

* added channel for smoothing in the notebook 2

* tests fix

* docstring fix

* ValueError String improvements

* fiber_segmentation_fix

* removed test which runs through all of the Segment Image Data notebook

* moving correct merged files over to nb2

* removed excess cell output

* removed mibitiff in notebooks 1,2 from #772

* merge main

* Added dataset information to the readme

* doc build fix

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3076 of 3293 relevant lines covered (93.41%)

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