angelolab / toffy / 1142
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Mph plots (#101)

* setup branch and notebook

* it works

* format and comments

* regression line plot

* move notebook functionality to helper functions

* pycode style

* add mass functionality

* fix existing csv issue

* add estimated time to mph functions and csvs

* add time axis to plots

* stupid character limit

* add default mass_range

* comments

* path validation

* change mass_range to mass_start and mass_stop

* get total_count for one fov at a time

* fix background issue

* validate paths issue

* cumulative total counts list

* enumerate

* compute_mph_metrics work one fov at a time

* remove return functionality

* typo

* fix axis merge cumulative count

* save figure change

* save figure change

* fix time axis to have standard ticks

* fix time axis to have standard ticks

* update images

* delete and generate new csv for combine_mph_metrics

* delete and generate new jpg for visualize_mph

* fix time retrieval to work one fov at a time

* tests for get_estimated_time

* tests for compute_mph_metrics

* raise error for bad json and add test

* tests for combine_mph_metrics and add os.remove for test csvs

* remove unecessary plt.show()

* add directory tests to combine_mph

* tests for visualize_mph

* add return functionality & test for combine_mph_metrics

* condense data retrieval from csv

* csv_dir to save fov csvs to, remove bin_file_path arg for combine_mph

* add watcher callbacks

* update requirements.txt

* add test prefix

* fix path issues

* really fix the path issues this time

* fix json test error

* really fix json test error

* use TemporaryDirectory instead of NamedTemporaryFile

* fix watcher argument names

* argument name change to bin_file_dir and comments

* remove excess path validations

* tims axis from ms to hours

* function for sample mph data

* watcher tests

* some case name changin... (continued)

1636 of 1729 relevant lines covered (94.62%)

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Jobs
ID Job ID Ran Files Coverage
1 1142.1 (MPLBACKEND=Agg) 0
94.62
 Travis Job 1142.1
Source Files on build 1142
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