angelolab / ark-analysis / 5483

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Upgrade to Python 3.7 (#592)

* added notes on issues upgrading to py37

* added changes

* changed rtd python version

* added spatial_lda and palettable

* added spatial_lda

* pycodestyle

* removed unnecessary file

* palettable

* removed tables from setup.py

* changed spatial-lda from 0.1.3 to 0.1.2

* dropped scikit image from 0.16.2 to 0.14.3

* changed python 3.7 -> 3.7.12 in .travis.yml

* changed python 3.7.12 -> 3.7 in .travis.yml

* removed spatial_lda dependency_links

* uncommented dep links

* adjsuted spatial_lda requirements

* depricated importlib-metadata from 4.11.4 to 3.6.0

* adjusted requirements

* setuptools==60.8.2

* importlib-metadata<3.4.0

* removed importlib_metadata requirements

* moved setuptools to the top of req.txt

* what version of setuptools and importlib-metadata is travis-ci using?

* updated travis' setuptools / importlib-metadata

* updated travis

* reverted scikit-image to 14.3

* replaced instances of 3.6 in conf.py, start_docker.sh, and dev.md with 3.7

* spelling

* Update docs/_rtd/development.md

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

* removed spatial_lda@primary

* added toffy stile dependency retrieval

* bumped matplotlib, ipympl, should work better with 3.8 libraries: toffy, mibi-bin-tools

* make_iterable now accounts for instances of T, s.t. type(T) == `type`

* updated VERSION from 0.2.10 -> 0.3.00

Co-authored-by: Sricharan Reddy Varra <srivarra@mbp.local>
Co-authored-by: Sricharan Reddy Varra <srivarra@DN52eo49.SUNet>
Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

5 of 5 new or added lines in 2 files covered. (100.0%)

2609 of 2742 relevant lines covered (95.15%)

0.95 hits per line