angelolab / ark-analysis / 5175
94%

DEFAULT BRANCH: master
Ran
Jobs 1
Files 33
Run time 3s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
5175

push

travis-ci-com

web-flow 
Spatial lda (#437)

* Initial commit

* Add functions for formatting cell table and checking arguments.  Add test for argument checking function.

* Processing branch (#439)

* Fixed code based on comments and added function for featurizing cell table.

* Additional fixes based on comments.  Added check and test functions for featurization.

* Added function, check, and test for creating difference matrices.  Fixed errors in other functions.

* Adjust character limits and fix TypeError

* Fix KeyError in test_check_create_difference_matrices_args()

* Added descriptions for read the docs.

* Added "return None" as per read the docs build fail message

* Removed "return None" from all argument checking functions in an attempt to appease the read the docs gods.

* Addresses comments and requested changes in PR.

* Updated docs and fixed tabs!

* Updated BASE_COLS to reflect default column names in settings.py

* Removed troublesome test.

* Fixed indexing issue in test_check_featurize_cell_table_args function.

* Re-fixed indexing issue in test_check_featurize_cell_table_args function.

* Replaced TypeError with ValueError for test 5 in test_check_featurize_cell_table_args

* Changes made as per re-review comments.

* Add check and test for empty lists in verify_in_list().  Removed empty list checks in processing check.

* Adjusted verify_in_list() so it can successfully accept ints and floats as single elements.

* Sorted requirements.txt

* Starting new branch for spatial LDA exploratory metrics.

* Changed make_segmented_csv to generate_cell_table and added default columns from settings.py

* Changed function name to make_cell_table to avoid conflicts.  Added all column names created by generate_cell_table().

* Add metrics functions

* Add tests for processing and metrics functions

* Removed silhouette function

* Commit for testing spatial_lda repo fixes

* Install spatial_lda from github, ... (continued)

2499 of 2632 relevant lines covered (94.95%)

0.95 hits per line

Jobs
ID Job ID Ran Files Coverage
1 5175.1 (MPLBACKEND=Agg) 0
94.95
 Travis Job 5175.1
Source Files on build 5175
Detailed source file information is not available for this build.