angelolab / ark-analysis / 5128

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travis-ci-com

Append cell meta cluster labels to cell table (#567)

* Add meta cluster labels to the cell table in cell clustering

* Add cell meta cluster appending to notebook tests

* Ensure notebook tests for cell clustering creates a cell table to test appending of meta cluster labels

* Save cell table with meta labels to a separate file as opposed to overwriting

* Change suffix from 'phenotyping' to 'cell_labels'

* Use pd.merge instead of verifying FOV and segmentation_label values, and leave any leftovers as 'Unassigned'

* Allow the root directory of cell table more flexibility

* Doc fix

* Need to attach cell_append_meta tag back to notebook

* Ensure the cell table is being written to the right path in the notebook test for cell clustering

19 of 19 new or added lines in 1 file covered. (100.0%)

2229 of 2344 relevant lines covered (95.09%)

0.95 hits per line