4665
92%
master: 94%

Ran 24 Feb 2022 09:06PM UTC

Jobs 1

Files 33

Run time 9s

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Build # 4665

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Integrate interactive remapping workflow into the pixel and cell clustering pipeline (#497)

* Initial commit of remapping addition to clustering pipeline

* Add heatmap testing

* Rework tests for file reading in metacluster_remap_gui

* Add sample notebooks with re-visualization scheme

* Relabel barchart, fix off-by-one meta cluster colormap error, ensure heatmap meta cluster colors are grouped together

* Don't divide pixel and cell cluster counts by 1000 when displaying the bar chart

* Add sample notebooks with new updated visualizations

* Clarifying comment

* Remap doc fixes

* Remove duplicate comment about referring to documentation for cell weighting mechanism

* Mega OCD

* Prevent loading of .DS_Store files when generating pixel cluster masks

* Bug fix in io_utils.list_files

* Address all code review comments except for column names in interactive remapping

* Add notebooks with seg_suffix in JSON params and cell heatmap without pixel_meta_cluster_rename_ prefix

* Add test for optional prefix trimming of column names in metacluster_from_files

* Patch file loading

* Need to specify loading .tif and .tiff files only

* Fix path

Run Details

2498 of 2716 relevant lines covered (91.97%)

0.92 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	4665.1 (MPLBACKEND=Agg)	24 Feb 2022 09:06PM UTC	0	91.97	Travis Job 4665.1

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