angelolab / ark-analysis / 4168
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Manual Metacluster remapping GUI (#432)

* Add 3 new requirements for metacluster gui

* Add initial POC of metacluster gui

* Fix marker label vertical alignment

* Update metacluster gui

* Update metacluster gui with barcharts, better selection indicators

* Move main code to python subpackage

* Add usage docs to metacluster gui example notebook

* Fix "zscore slider not forcing heatmap refresh" (cache expiration)

* Add selection and metacluster labels

* Make colors for metacluster labels stable to removal of existing metaclusters

* Refactor hCluster reference to MetaClusterData

* Add ipywidgets to rtd-requirements

* Update .gitignore

* Update usage docs

* Fix codestyle violations

* Ignore egginfo to allow `pip install -e .`

* Refactor to increase simplicity

* Add unit tests for metacluster remapping

* Allow metacluster index remap

* Fixup typo in rename

* Test that MCD has metacluster displaynames

* Add ability to change metacluster displaynames

* Add metacluster displaynames to frontend

* Throttle gui redraw rate

* Fix canvas update lag

* Add ipywidgets to actually modify metacluster displaynames

* Fix metacluster displayname state bug

* Organize toolbar widgets

* Add test for which metacluster

* Add simple GUI tests

* Add GUI tests with dummy clicks

* Remove obvious comment

* Fixup whitespace

* Add tests for asyncio throttle

* Add colormap tests

* Refactor throttle to be clearer

* Make gui tests wait for at least 1 render

* Test selected_clusters_mask

* Add coverage for cached rerender

* Fix race condition in throttle and initialization

* Refactor out MetaClusterGui boilerplate

* Add test for metacluster pixelcount weighted averaging

* Make blue-white-red diverging heatmap standard

* Fix heatmat normalization to center about zero

User a strategy that still gives good dynamic range

* Save names in output

* Update Doc... (continued)

2068 of 2191 relevant lines covered (94.39%)

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Jobs
ID Job ID Ran Files Coverage
1 4168.1 (MPLBACKEND=Agg) 0
94.39
 Travis Job 4168.1
Source Files on build 4168
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