npm / cli / #1643

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config: Restore --dev flag, unify --omit flatteners

This consolidates all the various --include and --omit configuration
flatteners into a single function, since they have to be interdependent
in order to function properly.

Fix: #2936

PR-URL: https://github.com/npm/cli/pull/2942
Credit: @isaacs
Close: #2942
Reviewed-by: @wraithgar

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