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broadinstitute / hellbender / 2858
81%

Build:
DEFAULT BRANCH: master
Ran 07 Oct 2015 07:08AM UTC
Jobs 2
Files 536
Run time 8min
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2858

Pull #928

travis-ci

laserson
Add reference broadcasting to BQSR

Adds a new file to LFS: human_g1k_v37.20.21.2bit. It was by applying the faToTwoBit binary from the "kent" UCSC utilities package on the similarly named fasta reference already in the repo.
Pull Request #928: Add reference broadcasting to BQSR

22321 of 27574 relevant lines covered (80.95%)

0.98 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
2
100.0
src/main/java/org/broadinstitute/hellbender/engine/spark/AddContextDataToReadSpark.java
2
100.0
src/main/java/org/broadinstitute/hellbender/tools/spark/BaseRecalibratorSpark.java
4
100.0
src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/ReferenceDataflowSource.java
11
100.0
src/main/java/org/broadinstitute/hellbender/utils/dataflow/BucketUtils.java
17
100.0
src/main/java/org/broadinstitute/hellbender/tools/spark/pipelines/ReadsPipelineSpark.java
21
100.0
src/main/java/org/broadinstitute/hellbender/utils/test/BaseTest.java
Jobs
ID Job ID Ran Files Coverage
1 2858.1 (CLOUD=mandatory) 07 Oct 2015 07:08AM UTC 0
18.71
Travis Job 2858.1
3 2858.3 (CLOUD=false) 07 Oct 2015 07:16AM UTC 0
78.88
Travis Job 2858.3
Source Files on build 2858
Detailed source file information is not available for this build.
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  • Travis Build #2858
  • Pull Request #928
  • PR Base - master (#2843)
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