broadinstitute / hellbender / 2807
79%
master: 81%

LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran
Jobs 1
Files 527
Run time 27s
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tomwhite 
Try RecalibrationTables combine no-op

2 of 2 new or added lines in 2 files covered. (100.0%)

21554 of 27431 relevant lines covered (78.58%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/transforms/BaseRecalibratorSparkFn.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/recalibration/RecalibrationTables.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/VariantShard.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/LoggingUtils.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/pipelines/SortBamSpark.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/engine/spark/SparkCommandLineProgram.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/transforms/markduplicates/PairedEnds.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/ApplyBQSRSpark.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/transforms/markduplicates/MarkDuplicatesSpark.java
8
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/transforms/markduplicates/MarkDuplicatesSparkUtils.java
8
100.0
 src/main/java/org/broadinstitute/hellbender/utils/recalibration/RecalibrationTables.java
9
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/transforms/BaseRecalibratorSparkFn.java
12
100.0
 src/main/java/htsjdk/samtools/reference/HadoopReferenceSequenceFileFactory.java
14
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/pipelines/ReadsPipelineSpark.java
16
100.0
 src/main/java/org/broadinstitute/hellbender/utils/dataflow/BucketUtils.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/BaseRecalibratorSpark.java
35
100.0
 src/main/java/org/broadinstitute/hellbender/utils/test/BaseTest.java
36
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/RefAPISource.java
Jobs
ID Job ID Ran Files Coverage
3 2807.3 (CLOUD=false) 0
78.58
 Travis Job 2807.3
Source Files on build 2807
Detailed source file information is not available for this build.