broadinstitute / hellbender / 2654
80%
master: 81%

LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran
Jobs 2
Files 522
Run time 9min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2654

push

travis-ci

lbergelson 
Making java.util.logging obey our verbosity setting

setting our logging level to WARN in tests

32 of 32 new or added lines in 2 files covered. (100.0%)

22210 of 27679 relevant lines covered (80.24%)

0.96 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/LoggingUtils.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/FeatureInput.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/ReferenceContext.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/ReferenceDataSource.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/MergeTails.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/SplitNCigarReads.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/tools/SplitReads.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/ReferenceDataflowSource.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/engine/GATKTool.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/pipelines/ReadsPreprocessingPipeline.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/bqsr/BaseRecalibrator.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/utils/SimpleInterval.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/utils/pairhmm/PairHMM.java
5
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/pipelines/BaseRecalibratorDataflow.java
5
100.0
 src/main/java/org/broadinstitute/hellbender/utils/variant/VariantContextVariantAdapter.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ValidateVariants.java
7
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/bqsr/RecalibrationEngine.java
7
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter.java
9
100.0
 src/main/java/org/broadinstitute/hellbender/utils/haplotype/Haplotype.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/bqsr/ReadRecalibrationInfo.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/utils/MannWhitneyU.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/RefAPISource.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/transforms/bqsr/BaseRecalibratorTransform.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/utils/BaseUtils.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/utils/pileup/PileupElement.java
15
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/DataflowCommandLineProgram.java
17
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/GoogleGenomicsReadToGATKReadAdapter.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/ArtificialReadUtils.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/utils/SequenceDictionaryUtils.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/utils/test/BaseTest.java
22
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/OverhangFixingManager.java
23
100.0
 src/main/java/org/broadinstitute/hellbender/utils/MathUtils.java
28
100.0
 src/main/java/org/broadinstitute/hellbender/exceptions/UserException.java
28
100.0
 src/main/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtils.java
30
100.0
 src/main/java/org/broadinstitute/hellbender/utils/dataflow/SmallBamWriter.java
31
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/AssemblyResultSet.java
35
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/AlignmentUtils.java
44
100.0
 src/main/java/org/broadinstitute/hellbender/utils/Utils.java
55
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/transforms/bqsr/BaseRecalibratorFn.java
Jobs
ID Job ID Ran Files Coverage
1 2654.1 (CLOUD=mandatory) 0
18.41
 Travis Job 2654.1
3 2654.3 (CLOUD=false) 0
77.31
 Travis Job 2654.3
Source Files on build 2654
Detailed source file information is not available for this build.