galaxyproject / planemo / 584

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Revise exit code handling for shed operations.

 - Perserve operation exit codes when possible, don't juse coalesce everything non-zero to -1.
 - Be more specific with exit codes when repositories don't exist (shed_diff returns 2 now for instance).
 - Add some more documentation about these things to shed_diff's docs.

Rebuild docs.

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