KarrLab / wc_sim / 2208

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Committed by Arthur Goldberg

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revise for models with only irreversible reactions, as made when reactions were split by SplitReversibleReactionsTransform in PrepForWcSimTransform; enables great simplification of determine_bounds(); simplify by not bounding individual reactions to stop species populations from going negative in the next time step -- just use separate constraints that prevent this; ensure that all reactions are irreversible; unify treatment of pseudo-reactions; set correct reversible attributes for rxns in dfba_test_model.xlsx; skip exception from Validator errors until https://github.com/KarrLab/wc_lang/issues/142 is resolved for fixtures/dfba_test_model.xlsx; simplify by making/using dict. of all wc_lang.DfbaObjReactions; stop warning when exchange reactions don't have the form 's ->'

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