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<a href="https://github.com/Ensembl/ensembl/commit/<a class=hub.com/Ensembl/ensembl/commit/5d88d181dad26e4c9b890f5f220a4fc514dd059a">5d88d181d<a href="https://github.com/Ensembl/ensembl/commit/5d88d181dad26e4c9b890f5f220a4fc514dd059a">&quot;&gt;ENSCORESW-3589: Add private subroutine create_chromosome_alias (#532)

* Add method to create chromosome alias

Add method to create a &amp;#39;chromosome&amp;#39; when no such coordinate system exists. Add to only fetch_by_name subroutine for now.

* Revert &amp;quot;Add method to create chromosome alias&quot;

This reverts commit </a><a class="double-link" href="https://github.com/Ensembl/ensembl/commit/<a class="double-link" href="https://github.com/Ensembl/ensembl/commit/b7da815082de45d6eb02b27783fbf1bc5cdebdff">b7da81508</a>">b7da81508</a><a href="https://github.com/Ensembl/ensembl/commit/5d88d181dad26e4c9b890f5f220a4fc514dd059a">.

* Add method to create chromosome alias, also saves a karyotype-related cache.

* Make new method private

* Test that a chromosome CoordSystem object does not exist before alias is created

* Remove debug statement from tests

* Remove print/debug comments

* Test sliceAdaptor object is created ok from Parus major test db

* If multiple coordSystem candidates to alias, choose one with best rank

* Add hypothetical test of multiple coordSystems that could be aliased. Add related checks to SliceAdaptor.

* Fix typo in subroutine header text

* Test alias is created correctly. Reformat alias tests to define them more clearly.

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