160
93%

Ran 04 Sep 2015 05:05AM UTC

Jobs 1

Files 22

Run time 3s

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Build # 160

Build Type

Pull #13

travis-ci

Committed by

mlin

Commit Message

Simplify range_of_bcf by taking advantage of bcf1_t::rlen, which htslib sets
to END if available upon parsing. This lets us switch from a function that
can potentially fail to a convenient constructor from a bcf1_t. For added
safety, we sanity-check the END field and bcf1_t::rlen upon initial
ingestion into the database (BCFKeyValueData::import_gvcf).

Pull Request Pull Request #13: Simplify range_of_bcf by taking advantage of bcf1_t::rlen

Run Details

27 of 27 new or added lines in 4 files covered. (100.0%)

853 of 982 relevant lines covered (86.86%)

68.38 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
2	89.22	-0.1%	src/genotyper.cc
4	90.56	-1.61%	src/BCFKeyValueData.cc

Uncovered Existing Lines

Lines	Coverage	∆	File
23	30.56	-44.44%	src/types.cc

Jobs

ID	Job ID	Ran	Files	Coverage
1	160.1	04 Sep 2015 05:05AM UTC	22	86.86	Travis Job 160.1

Source Files on build 160

Coverage	∆	File	Lines	Relevant	Covered	Missed	Hits/Line

dnanexus-rnd / GLnexus / 160
93%

README BADGES
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New Missed Lines in Diff

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Source Files on build 160

dnanexus-rnd / GLnexus / 160 93%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 160

dnanexus-rnd / GLnexus / 160
93%

README BADGES
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