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angelolab / ark-analysis / 2080
94%

Build:
DEFAULT BRANCH: master
Ran 06 Oct 2020 06:11PM UTC
Jobs 1
Files 19
Run time 3s
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Add k-means clustering process for neighborhood matrices (#248)

* Add stubs for new functions to add to for k-means cluster analysis

* Add framework (without testing) for clustering

* Documentation and visualization framework (with testing)

* Add testing suite for clustering process

* Address code review comments

* Name changes for spatial_analysis

* Address more code review comments

* Address final review comments by Noah (simpler distribution, move neighborhood mat creation to test_utils

* Move EVERY data generating function in spatial_analysis and spatial_analysis_test to test_utils

* Fix leftover PYCODESTYLE errors in test_utils.py

* Fix col_split error checking in visualize.py

* Fix a bulleted list documentation issue in test_utils

* Alphabetize requirements.txt :-)

* ...and requirements-test.txt

* Address Noah's comments (docstring, better func names)

* Comment and variable changes for testing compute_kmeans_cluster_metric

* Implement the temporary six solution

1277 of 1380 relevant lines covered (92.54%)

0.93 hits per line

Jobs
ID Job ID Ran Files Coverage
1 2080.1 (MPLBACKEND=Agg) 06 Oct 2020 06:11PM UTC 0
92.54
Travis Job 2080.1
Source Files on build 2080
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