broadinstitute / hellbender / 1885
79%
master: 81%

LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran
Jobs 3
Files 447
Run time 6min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
1885

push

travis-ci

davidbenjamin 
Rewrote all code involving logarithms to use natural log instead of log-10.

112 of 112 new or added lines in 7 files covered. (100.0%)

19205 of 24411 relevant lines covered (78.67%)

1.17 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/pairhmm/PairHMM.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/pairhmm/PairHMMModel.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/utils/MathUtils.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/QualityUtils.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/RefAPISource.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/utils/pairhmm/PairHMM.java
9
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/ReadsDataflowSource.java
10
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/DataflowCommandLineProgram.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/dev/pipelines/bqsr/BaseRecalibratorDataflowUtils.java
16
100.0
 src/main/java/org/broadinstitute/hellbender/utils/MathUtils.java
17
100.0
 src/main/java/org/broadinstitute/hellbender/dev/tools/walkers/bqsr/BaseRecalibratorWorker.java
19
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/GoogleGenomicsReadToGATKReadAdapter.java
Jobs
ID Job ID Ran Files Coverage
1 1885.1 (CLOUD=mandatory) 0
19.48
 Travis Job 1885.1
3 1885.3 (CLOUD=false) 0
78.15
 Travis Job 1885.3
4 1885.4 (DATAFLOW_RUNNER=SparkPipelineRunner CLOUD=mandatory) 0
19.48
 Travis Job 1885.4
Source Files on build 1885
Detailed source file information is not available for this build.