angelolab / ark-analysis / 1377

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Update distance matrix to xarray type (#200)

* Fix randomization error in synthetic spatial gen and begin updating type of distance matrix to xarray

* Update notebooks and spatial_analysis_utils functions to handle xarray data type for distance matrices

* Forgot to change spatial analysis script outside of Docker

* Further integration

* Fix closenum tests

* Address minor changes (aka other than dict passing)

* Fix centroid labelling with prop.label, which makes life hella easier

* Change Erin's data and adjust accordingly

* Pycodestyle and xarray import crap

* Last fixes

* Update expression matrix, calc_dist_matrix, and notebook to reflect string-only fov indexing

* Forgot to add new segmentation labels

* Change list to .values for indexing purposes

* Break up logic and update comments

* Fix summing error in closenum random

* Remove old data files

33 of 33 new or added lines in 3 files covered. (100.0%)

830 of 933 relevant lines covered (88.96%)

0.89 hits per line