MikeHeiber / Excimontec / 285
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JOSS Paper Update (#112)

- Resolves #107 
- Resolves #108
- Resolves #109

### Added
- .travis.yml - Build matrix entries and corresponding script code for testing clang compiler
- Changelog - notes about all changes in this PR
- makefile - Detection of versioned g++ compilers
- makefile - Detection of clang compiler and setting the compiler flags
- paper/paper.md - Additional information about what KMC simulations can be used for and specifically what types of simulation tests come with v1.0
- paper/paper.md - Installation instructions for GCC compiler and GNU Make
- README.md - Information about clang compiler support
- User_Manual.pdf - Information about the parameter file format and syntax
- User_Manual.pdf - Information about some of the parameters and models that were missing

### Changed
- KMC_Lattice - KMC_Lattice submodule to v2.1.0
- LICENSE - Updated copyright statement years
- main.cpp - Version string to v1.0.0
- makefile - Updated copyright statement years
- makefile - Updated how the underlying compiler is detected now using 'mpicxx -show'
- paper/paper.md - Updated paper to specify that TravisCI is doing continuous integration tests instead of simply calling them integration tests
- README.md - Updated information about Travis CI testing configuration
- README.md - Updated copyright statement years
- User_Manual.pdf - Updated manual to show the parameters file section in each section of the manual and explain more directly what the parameters are used for

### Removed
- .travis.yml - Build matrix entries for testing GCC 4.x
- .travis.yml - Build matrix entries for mpich with GCC 6 and 8

### Fixed
- .travis.yml - Changed Linux build matrix entries to use xenial or bionic instead of trusty to fix code coverage reporting error

2528 of 2670 relevant lines covered (94.68%)

46012215.06 hits per line

Jobs
ID Job ID Ran Files Coverage
1 285.1 (OPTIONS="GCC_VERSION=default && MPI=openmpi && TARGET=test_coverage") 0
94.68
 Travis Job 285.1
Source Files on build 285
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