JamesYang007 / autoppl / 514

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New fastad integration nuts (#46)

* Restructure all classes to reuse a lot of tools from fastad

* Support MH fully

* Support NUTS fully

* Refactored everything except mcmc

* First attempt at removing armadillo

* Add more data locality

* Change build tree to use only 1 cache line

This saves a lot of time because allocations are costly with Eigen.

* Increase threshold for nuts unittest

* Fix dumb compiler issues for gcc

* Change second regression benchmark example

* Remove armadillo from library

* remove armadillo from benchmark

* Update readme removing armadillo and adding eigen, setup and cmake

* Remove functional and unnecessary math utils

* Add example of ESS where if-else branching occurs

* Add discrete example to MH

* Fix bug in logging

* Add config for mh, unify mcmc result, add bayes net example with mh

* Add support for covariance matrix

* Delete accidentally tracked metafiles

* Ignore all stan produced files

* Fully support constraints mechanism

* Update README and example code

* Fix uniform unused get lambda

* Make travis run the two tests that are failing

* Undo running the two tests

* Add more unittests

* Fully tested tp expressions with stochastic volatility

* Add stochastic volatility benchmark code

* Change stochastic volatility data with random seed

* Generalize constraint with any variable expression

* Add install to cmake and update readme

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