Public-Health-Bioinformatics / LexMapr / 687
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Classification (#93)

* A temporary owl file for terms available for curation.

This is a temporary owl file for terms (currently not available in ontologies) available for further considearion and curation in the ontologies which is used to enable classification in the interim.

* Revamping of classification component based on newer IFSAC+ classification schema.

Includes updated predefined resources.
Addition of some new predefined resources.
Functionality to deal with multi class label values in bucket labels.
Functionality to customize ordering of class labels in the final class assignment.
Updated and newer rules for post-classification refinement of  IFSAC labels.
Excluded "hasBroadSynonym" from the mapping considerations
Functionality to convert the matched component to standard Upper case Ontology Ids
Four new modules for assignment of confidence level in mapping (for future use)

* Update lexmapr/predefined_resources/ifsac-refinement.csv

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline_classification.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline_classification.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline_classification.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline_classification.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline_classification.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline_helpers.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline_helpers.py

Co-authored-by: ivansg44 <ivan.gill@bccdc.ca>

* Update lexmapr/pipeline.py

Co-authored-by: ivansg44... (continued)

1032 of 1285 relevant lines covered (80.31%)

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Jobs
ID Job ID Ran Files Coverage
1 687.1 (PYTHONHASHSEED=0) 0
80.31
 Travis Job 687.1
2 687.2 (PYTHONHASHSEED=0) 0
80.31
 Travis Job 687.2
Source Files on build 687
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