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dicompyler / dicompyler-core / 813
91%

Build:
DEFAULT BRANCH: master
Ran 12 Aug 2020 04:29PM UTC
Jobs 4
Files 7
Run time 2min
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Added DICOM-RT Dose grid summation w/ interpolation from DVHA code (#164)

* init commit

* summation_type attribute

* update DICOM tags after dose grid summation

* test_dose.py init commit, overload multiplication

* PEP line length, update doc string format, remove other_factor in summation
* Began using Black to format code with 79 character line length
* Doc string formatting updated to be consistent with other dicompyler-core files
* The other_factor parameter in add, direct_sum, and interp_sum was removed in favor of multiply() and * overload

* remove interp_by_block (never worked), GridFrameOffsetVector test, minor changes

* implement proper error/warning raises, attr equality checks per PR comments
* Avoid extra list creation in DoseGrid.shape
* DoseGrid.scale raises UserWarning if non-uniform GridFrameOffsetVector detected
* Raise UserWarning in DoseGrid.add() if mismatched DoseSummationType, DoseType, DoseUnits, ImageOrientationPatient

* use warnings.warn instead of raising UserWarning

* Tests: add, mul, & rmul overload, add with attr mismatch. fixed interp testing

* Tests: set_dicom_tag_value, add_dicom_sequence, validate_attr_equality

* test modality check, save_dcm. minor edits.

* DoseGrid examples

* remove points property, raise error on negative doses

* rename summation_post_processing to dose_grid_post_processing, minor reorganization

* move DoseGrid example from docstring to usage.rst

* add'l map_coordinates param, direct_sum & interp_sum private

* test spline interp, suppress UserWarning in test output

* remove trailing comma for TravisCI

* boundary dose validation and test

* split max_boundary_value function, finish unit testing

* simplify error catching assertions

* simplify array/boolean assertions

356 of 509 branches covered (69.94%)

153 of 153 new or added lines in 2 files covered. (100.0%)

991 of 1135 relevant lines covered (87.31%)

3.46 hits per line

Jobs
ID Job ID Ran Files Coverage
1 813.1 12 Aug 2020 04:29PM UTC 0
86.87
Travis Job 813.1
2 813.2 12 Aug 2020 04:29PM UTC 0
86.26
Travis Job 813.2
3 813.3 12 Aug 2020 04:29PM UTC 0
86.26
Travis Job 813.3
4 813.4 12 Aug 2020 04:29PM UTC 0
86.26
Travis Job 813.4
Source Files on build 813
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