broadinstitute / hellbender / 1736
81%
master: 81%

LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran
Jobs 1
Files 455
Run time 1min
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1736

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travis-ci

lbergelson 
refactoring

88 of 88 new or added lines in 4 files covered. (100.0%)

19279 of 24635 relevant lines covered (78.26%)

0.78 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/transforms/metrics/insertsize/CombineHistogramsIntoMetricsFile.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/transforms/RefBasesFromAPI.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/transforms/composite/RefBasesForReads.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/metrics/MultiLevelMetrics.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/RefAPIMetadata.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/ArtificialReadQueryIterator.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/markduplicates/DuplicationMetrics.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/ReadUtils.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/transforms/markduplicates/PairedEnds.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/utils/SimpleInterval.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/engine/GATKTool.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/transforms/composite/AddContextDataToRead.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/ArtificialReadIterator.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/sam/SortSam.java
5
100.0
 src/main/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtils.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/BaseGraph.java
7
100.0
 src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineProgram.java
9
100.0
 src/main/java/org/broadinstitute/hellbender/metrics/MultiLevelCollector.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/markduplicates/OpticalDuplicateFinder.java
14
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/SplitNCigarReads.java
16
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/sam/BuildBamIndex.java
17
100.0
 src/main/java/org/broadinstitute/hellbender/dev/tools/walkers/bqsr/BaseRecalibratorDataflow.java
20
100.0
 src/main/java/org/broadinstitute/hellbender/dev/tools/walkers/bqsr/BaseRecalibratorWorker.java
22
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/transforms/markduplicates/MarkDuplicatesUtils.java
23
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/pipelines/ReadsPreprocessingPipeline.java
30
100.0
 src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineParser.java
33
100.0
 src/main/java/org/broadinstitute/hellbender/exceptions/UserException.java
49
100.0
 src/main/java/org/broadinstitute/hellbender/utils/baq/BAQ.java
50
100.0
 src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVariantContextUtils.java
Jobs
ID Job ID Ran Files Coverage
2 1736.2 (CLOUD=false) 0
78.26
 Travis Job 1736.2
Source Files on build 1736
Detailed source file information is not available for this build.