115
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Ran 04 Aug 2015 05:55PM UTC

Jobs 2

Files 113

Run time 25s

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Build # 115

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push

travis-ci

Committed by

franknoe

Commit Message

[estimation: reversible tmatrix MLE and sampler]: Added option to suppress the not-converged warning. Using that option and running only 100 steps in the initialization of the reversible transition matrix sampler. That's sufficient for the sampler because the MLE is just a starting point anyway. In cases where the reversible MLE doesn't converge well - and that seems to happen often for the fractional counts employed in Bayesian methods - we would otherwise optimize for 1M steps, just to throw that result away in the first sampling step. This change makes a huge performance difference for the Bayesian HMM, where a transition matrix sampling is run for every iteration of the algorithm (usually 100 times or more).

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8363 of 9333 relevant lines covered (89.61%)

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Jobs

ID	Job ID	Ran	Files	Coverage
1	115.1 (byk9bmnGvP3qDfpYvPKX4909KeS6pJQtfW+GkSsuHy4vnp++gu2IsXC/CJeCB0r7hpoRp7Z+XlOtYmJLvb585LZmGaqIs5LKs1DimJniAg5anpywOnaXodspeFcz6UWtLlIAQQS3SvP9SXvvrlIiF8IwXqWfEewtoGbpiCj3dEo=[secure])	04 Aug 2015 05:55PM UTC	0	89.6	Travis Job 115.1
2	115.2 (byk9bmnGvP3qDfpYvPKX4909KeS6pJQtfW+GkSsuHy4vnp++gu2IsXC/CJeCB0r7hpoRp7Z+XlOtYmJLvb585LZmGaqIs5LKs1DimJniAg5anpywOnaXodspeFcz6UWtLlIAQQS3SvP9SXvvrlIiF8IwXqWfEewtoGbpiCj3dEo=[secure])	04 Aug 2015 05:55PM UTC	0	89.61	Travis Job 115.2

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