MouseLand / suite2p / 272
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Dev branch pull into master (#442)

* simplified get_frames()

* moved io-bound get_frames() function to io/binary.py

* simplified make_blocks()

* removed unused function shift_data_subpixel()

* fixed docstring and removed unused lines from rigid.shift_data()

* refactored out 'offsets' data structure

* removed redundant nonrigid.make_blocks() call.

* changed print(warning) to warning.warn(), Exception to ValueException,

* pulled 1Preg transformation out of rigid.phasecorr()

* reordered re_1p n phasecorr_refernce()

* split refAndMasks parameter in rigid.phasecorr() into its components and moved numba addmultiply() function to utils.py

* removed unused gpu_phasecorr()

* removed redundant spatial_smooth during nonrigid registration

* refactored non-rigid registration into own function: nonrigid.shift()

* pulled nonrigid.shift() out of compute_motion_and_shift()

* removed commented-out code in compute_crop()

* removed unused imports

* refactored out RefAndMasks and RefAndMasksNR

* refactored out phasecorr_cpu()

* refactored out nonrigid.shift()

* removed unused call to nonrigid.transform_data()

* removed unused vars from nonrigid.phase_corr()

* moved var use closer to declaration

* Detection/Extraction regression tests added along with additional registration tests. (#382)

* Completed 1plane1chan and 2plane2chan tests for detection/extraction. Added pre_registered data for 2plane2chan case.

* Finished adding preprocessing and OASIS to regression tests.

* Added regression test for classification module. Added tailored stat.npy that's used before classifier is called.

* Added np allclose due to sklearn.LogisticRegression's slight differences in output

* Modified tolerance value after checking on another computer.

* removed unused patlib import in classification tests.

* Refactored check_registration_output in test_registration_module.py

* Added input data that requir... (continued)

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ID Job ID Ran Files Coverage
1 272.1 0
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 Travis Job 272.1
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