JamesYang007 / autoppl / 451
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James.yang/var vec mat (#37)

* Move expr_builder inside expression

* In progress of modifying var vec mat

* Separating param/data with var/vec

* Draft of data and param with corresponding traits

* Refactored everything except mcmc including tests

* Add integration test for subscripting vec-like params

* Rename to integration test and combine all expression tests into one executable

* Add support for metropolis hastings

* Restore test cases to original sample size

* Add support for NUTS

* Fix small syntax in examples

* Fix uninitialized value issue in sampler_tools test

* Try generating and saving the value

* Try initializing member arrays in ctor

* Using c++20 style implementation of identity

* Activate model!

* Add test cases for min and max edge cases

* Resolve some TODOs

* Clean up traits related files

* Fix syntax for storage

* Fix pdf to have same API as log_pdf

* Fix header includes

* Add dot product, cached AD vars, stronger concepts

- More type safety has been added in traits
- Model ad_log_pdfs and variable expression to_ad member functions
  allow users to pass in cache in case these expressions need them.
- Dot product finally implemented (performance is still great)
- NUTS creates long cache vector (the extra memory for adj and values
  may not be necessary)
- more unittests with dot product

* Optimize NUTS to allocate less memory for cache variables

* Reorganized examples, write up design doc, and clean up type safety in binop

* More complicated regression example

* Add more comments and complete type check on all classes. Fix really really important bug in dot

* Move activate and activate_cache outside of mcmc

* Modify test to use cache

* Apply caching for normal and uniform

* Modify mcmc algorithms with different activate API

* Add support for bernoulli ad expression

* Remove gcc no warning flag and static cast void unused lambdas
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Jobs
ID Job ID Ran Files Coverage
2 451.2 (CXX_COMPILER="g++-7" CC_COMPILER="gcc-7" COVERALL="ON" CMAKE_OPTIONS="-DAUTOPPL_ENABLE_TEST_COVERAGE=ON") 0
100.0
 Travis Job 451.2
Source Files on build 451
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