griffithlab / dgi-db / 1585
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1585

Pull #399

travis-ci

web-flow 
Merge fa553fb17 into 122cb6ea4
Pull Request #399: WIP: Add linkout to source's interaction claim pages

58 of 58 new or added lines in 22 files covered. (100.0%)

1298 of 6757 relevant lines covered (19.21%)

0.47 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 app/models/data_model/interaction_claim.rb
1
100.0
 lib/genome/importers/drug_bank/new_drug_bank.rb
1
100.0
 lib/genome/importers/guide_to_pharmacology_interactions/new_guide_to_pharmacology.rb
1
100.0
 lib/genome/importers/nci/nci.rb
1
100.0
 lib/genome/online_updater.rb
1
100.0
 lib/genome/online_updaters/ckb/api_client.rb
1
100.0
 lib/genome/online_updaters/docm/updater.rb
2
100.0
 lib/genome/importers/fda/fda.rb
2
100.0
 lib/genome/online_updaters/civic/api_client.rb
2
100.0
 lib/genome/online_updaters/oncokb/updater.rb
3
100.0
 lib/genome/importers/chembl/chembl_tsv_importer.rb
3
100.0
 lib/genome/importers/my_cancer_genome/my_cancer_genome_tsv_importer.rb
3
100.0
 lib/genome/importers/my_cancer_genome_clinical_trial/my_cancer_genome_clinical_trial_tsv_importer.rb
3
100.0
 lib/genome/importers/pharmgkb/pharmgkb_tsv_importer.rb
3
100.0
 lib/genome/importers/talc/talc_tsv_importer.rb
3
100.0
 lib/genome/importers/tdg_clinical_trial/tdg_clinical_trial_tsv_importer.rb
3
100.0
 lib/genome/importers/tend/tend_tsv_importer.rb
3
100.0
 lib/genome/online_updaters/civic/updater.rb
4
100.0
 lib/genome/importers/ttd/ttd_tsv_importer.rb
4
100.0
 lib/genome/online_updaters/ckb/updater.rb
6
100.0
 app/models/data_model/interaction_claim_link.rb
6
100.0
 lib/genome/importers/cgi/new_cgi.rb

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 lib/genome/importers/drug_bank/new_drug_bank.rb
1
100.0
 lib/genome/online_updaters/civic/updater.rb
1
100.0
 lib/genome/online_updaters/ckb/updater.rb
1
100.0
 lib/utils/pmid.rb
3
100.0
 app/models/application_record.rb
4
100.0
 app/models/data_model/drug_alias_blacklist.rb
4
100.0
 lib/genome/extensions/uuid_primary_key.rb
4
100.0
 lib/utils/logging.rb
5
100.0
 app/models/data_model/chembl_molecule_synonym.rb
6
100.0
 app/models/data_model/drug_claim_attribute.rb
6
100.0
 app/models/data_model/gene_gene_interaction_claim_attribute.rb
6
100.0
 app/models/data_model/interaction_claim_attribute.rb
6
100.0
 app/presenters/interaction_detail_presenter.rb
6
100.0
 lib/genome/extensions/null_object.rb
7
100.0
 app/controller_filters/tour_filter.rb
7
100.0
 app/controllers/interactions_controller.rb
7
100.0
 app/models/data_model/drug_attribute.rb
7
100.0
 app/models/data_model/gene_attribute.rb
7
100.0
 app/models/data_model/interaction_attribute.rb
7
100.0
 app/models/data_model/publication.rb
7
100.0
 app/presenters/drug_detail_presenter.rb
8
100.0
 app/models/data_model/drug_claim_alias.rb
8
100.0
 app/models/tour.rb
8
100.0
 app/presenters/gene_detail_presenter.rb
8
100.0
 lib/utils/database.rb
9
100.0
 app/presenters/related_drug_presenter.rb
9
100.0
 lib/genome/importers/delimited_row.rb
10
100.0
 app/models/data_model/drug_alias.rb
10
100.0
 app/models/data_model/gene_claim_alias.rb
10
100.0
 app/models/data_model/gene_gene_interaction_claim.rb
10
100.0
 app/presenters/trust_level_presenter.rb
11
100.0
 app/controllers/sources_controller.rb
11
100.0
 app/models/data_model/source_type.rb
12
100.0
 app/models/data_model/gene_claim_attribute.rb
13
100.0
 app/models/data_model/gene_alias.rb
13
100.0
 lib/genome/extensions/has_cacheable_query.rb
14
100.0
 app/filters/anti_neoplastic.rb
14
100.0
 app/filters/fda_approved_drug.rb
14
100.0
 app/filters/gene_claim_category.rb
14
100.0
 app/filters/identity_filter.rb
14
100.0
 app/filters/immunotherapy.rb
14
100.0
 app/filters/interaction_claim_type.rb
14
100.0
 app/filters/source_db_name.rb
14
100.0
 app/presenters/search_result_presenter.rb
14
100.0
 app/searches/search.rb
15
100.0
 app/filters/category_source_db_name.rb
15
100.0
 app/filters/clinically_actionable.rb
15
100.0
 app/filters/drug_claim_type.rb
15
100.0
 app/filters/druggable_genome.rb
15
100.0
 app/filters/drug_resistance.rb
15
100.0
 app/filters/gene_claim_category_interaction.rb
15
100.0
 app/filters/source_trust_level.rb
15
100.0
 app/models/data_model/drug_claim_type.rb
16
100.0
 app/controllers/drugs_controller.rb
16
100.0
 app/filters/category_source_trust_level.rb
16
100.0
 lib/genome/extensions/enumerable_type.rb
17
100.0
 app/filters/filter.rb
17
100.0
 app/presenters/interaction_search_results_api_v2_presenter.rb
17
100.0
 app/presenters/news_presenter.rb
17
100.0
 app/presenters/paginated_collection_presenter.rb
17
100.0
 app/sort_orders/category_result_sort_order.rb
17
100.0
 lib/genome/normalizers/drug_type.rb
18
100.0
 app/models/data_model/interaction_claim_type.rb
19
100.0
 app/models/data_model/source_trust_level.rb
20
100.0
 app/controller_filters/news_filter.rb
20
100.0
 app/helpers/application_helper.rb
20
100.0
 app/models/data_model/interaction_claim.rb
21
100.0
 app/presenters/druggable_gene_category_presenter.rb
26
100.0
 app/models/data_model/gene.rb
27
100.0
 app/models/data_model/interaction.rb
27
100.0
 app/presenters/interaction_presenter.rb
28
100.0
 app/models/data_model/gene_claim_category.rb
31
100.0
 app/controllers/static_controller.rb
31
100.0
 app/models/interaction_search_result.rb
32
100.0
 app/presenters/source_presenter.rb
35
100.0
 lib/genome/groupers/interaction_grouper.rb
36
100.0
 app/filters/filter_helper.rb
37
100.0
 app/models/data_model/chembl_molecule.rb
39
100.0
 app/models/data_model/drug_claim.rb
39
100.0
 app/searches/lookup_interactions.rb
41
100.0
 app/controllers/genes_controller.rb
41
100.0
 app/models/data_model/drug.rb
41
100.0
 lib/genome/importers/importer.rb
42
100.0
 app/models/data_model/gene_claim.rb
43
100.0
 app/searches/lookup_genes.rb
44
100.0
 app/presenters/pagination_presenter.rb
47
100.0
 lib/genome/groupers/gene_grouper.rb
49
100.0
 app/controllers/application_controller.rb
49
100.0
 app/presenters/drug_presenter.rb
49
100.0
 app/searches/lookup_categories.rb
51
100.0
 app/controllers/services_v1_controller.rb
53
100.0
 app/models/data_model/source.rb
57
100.0
 app/presenters/gene_presenter.rb
72
100.0
 app/filters/filter_chain.rb
100
100.0
 lib/genome/groupers/drug_grouper.rb
103
100.0
 app/controllers/services_v2_controller.rb
Jobs
ID Job ID Ran Files Coverage
1 1585.1 (2.6.5, RAILS_ENV=test TRAVIS_BUILD=true) 0
19.21
 Travis Job 1585.1
Source Files on build 1585