98: 63%

Ran 12 Jul 2020 05:54PM UTC

Jobs 2

Files 190

Run time 3min

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Build # 8173

Build Type

cron

travis-ci

Committed by

muffato

Commit Message

Merge branch 'release/102'

* release/102: (45 commits)
  Die if there is no biotype group (would have avoided the issue with vault RNAs) - which would now be caught by a DC in the pipeline
  bugfix: the last EPO database has been lost, so reuse is not possible
  bugfix: need the path to the correct species-tree
  bugfix: we did run gerp
  bugfix: some filter tags need 'str:' prefixes
  Apply suggestions from code review
  bugfix: these two should be using GenomeDB::display_name like the rest of our codebase
  bugfix: check_taxon_filter won't find anything prefixed by 'str:'
  added trailing commas
  fixed parenthesis
  set reg config files for all divisions
  bugfix: ancestral db is required
  fixed indentation of beta_vulgaris
  added quercus_lobata
  added kalanchoe_fedtschenkoi
  added eutrema_salsugineum
  Include CheckSequenceTable in DC
  bugfix: set_gerp_neutral_rate should receive the mlss_id of the alignment on which gerp will run
  bugfix: we need to rerun the alignment if any of these two gets an assembly update
  bugfix: the rice set of species is frozen (but not their assemblies)
  ...

Run Details

13811 of 21363 relevant lines covered (64.65%)

744.2 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
3	8173.3 (AUTH_TOKEN=[secure] COVERALLS_PARALLEL=true COVERAGE=true)	12 Jul 2020 05:57PM UTC	0	63.55	Travis Job 8173.3
6	8173.6 (AUTH_TOKEN=[secure] COVERALLS_PARALLEL=true TEST_COMPILATION=false COVERAGE=true)	12 Jul 2020 05:54PM UTC	0	94.48	Travis Job 8173.6

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release/98: 63%

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