1232
86%

Ran 19 Jun 2020 09:04PM UTC

Jobs 2

Files 29

Run time 10min

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Build # 1232

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

PhyLiNC v3: rooting and optimization fixes (#123)

features:  
- new option to `keeporiginalroot`, even if it has degree one

bug fixes:  
- fixes displayed tree rooting in non-tree-child networks
- avoids branch length and gamma optimization that would not change the likelihood (e.g. branch lengths with γ=0)

docs:  
- new info avoiding hybrid ladders in docs
- site count information in phyLiNC logging
- new output to remind users that estimated networks are unrooted
- small typo in manual docs

Co-authored-by: Cecile Ane <cecileane@users.noreply.github.com>

Run Details

8451 of 10060 relevant lines covered (84.01%)

90843.81 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	1232.1	19 Jun 2020 09:04PM UTC	29	84.01	Travis Job 1232.1
2	1232.2	19 Jun 2020 09:14PM UTC	29	84.01	Travis Job 1232.2

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