campbio / celda / 753
22%
master: 51%

LAST BUILD BRANCH: devel
DEFAULT BRANCH: master
Ran
Jobs 1
Files 40
Run time 3min
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753

Pull #288

travis-ci

web-flow 
Merge 0198b73fb into 166f6d4b2
Pull Request #288: Use SingleCellExperiment object

8324 of 8324 new or added lines in 36 files covered. (100.0%)

2417 of 10939 relevant lines covered (22.1%)

3851.31 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
82.95
 0.78% src/DecontX.cpp
3
86.96
 -13.04% R/matrixSums.R
11
59.26
 R/accessors.R
26
68.42
 14.67% R/decon.R
26
0.0
 -100.0% R/feature_selection.R
27
0.0
 0.0% R/elbow.R
29
0.0
 0.0% R/geneSetEnrich.R
35
0.0
 0.0% R/getDecisions.R
36
18.18
 R/misc.R
43
0.0
 R/featureModuleLookup.R
44
86.71
 2.01% R/celda_C.R
47
82.33
 82.33% R/plot_decontx.R
50
0.0
 -74.26% R/celda_heatmap.R
62
0.0
 R/celdatosce.R
91
24.79
 R/clusterProbability.R
105
0.0
 R/celdatSNE.R
111
0.0
 -25.23% src/cG_calcGibbsProbY.cpp
117
65.59
 65.59% R/celdaGridSearch.R
120
0.0
 R/celdaUMAP.R
120
65.81
 R/simulateCells.R
136
0.0
 R/plotHeatmap.R
139
0.0
 0.0% R/diffExp.R
140
0.0
 R/celdaProbabilityMap.R
140
0.0
 R/moduleHeatmap.R
142
5.33
 R/loglikelihood.R
146
34.06
 -40.17% R/celda_functions.R
147
44.16
 -53.95% R/initialize_clusters.R
160
0.0
 0.0% R/findMarkersTree.R
225
38.52
 R/factorizeMatrix.R
335
16.95
 -81.7% R/split_clusters.R
366
0.0
 -81.04% R/plot_dr.R
387
21.34
 R/perplexity.R
412
0.0
 -91.54% R/celda_G.R
534
6.87
 -83.03% R/celda_CG.R
932
0.0
 0.0% R/recursiveSplit.R
1042
0.0
 -70.22% R/semi_pheatmap.R

Uncovered Existing Lines

Lines Coverage ∆ File
1
0.0
 -70.22% R/semi_pheatmap.R
3
0.0
 0.0% R/findMarkersTree.R
5
34.06
 -40.17% R/celda_functions.R
6
44.16
 -53.95% R/initialize_clusters.R
7
68.42
 14.67% R/decon.R
14
0.0
 -81.04% R/plot_dr.R
19
86.71
 2.01% R/celda_C.R
24
0.0
 -77.42% src/perplexity.c
30
0.0
 -91.54% R/celda_G.R
49
6.87
 -83.03% R/celda_CG.R
57
16.95
 -81.7% R/split_clusters.R
Jobs
ID Job ID Ran Files Coverage
1 753.1 40
22.1
 Travis Job 753.1
Source Files on build 753