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Added config file to handle default directories (#38)

* Squashed commit of the following:

commit <a class=hub.com/brainglobe/brainatlas-api/commit/8442627ee7b9df35958e7d8989737c956d0d9503">8442627ee<a href="https://github.com/brainglobe/brainatlas-api/commit/becbdcbc884f59bc72272f15f0da779b89f6ecbe">
Author: FedeClaudi &lt;federicoclaudi@protonmail.com>
Date:   Wed Jun 10 23:17:16 2020 +0100

    moved hierarchy to atlas

commit <a class=hub.com/brainglobe/brainatlas-api/commit/f22ded3be3d89535b1b044665908384695f1a67b">f22ded3be<a href="https://github.com/brainglobe/brainatlas-api/commit/becbdcbc884f59bc72272f15f0da779b89f6ecbe">
Author: FedeClaudi &lt;federicoclaudi@protonmail.com&gt;
Date:   Wed Jun 10 22:51:36 2020 +0100

    structures

* I/O of a config file

* Adding full configuration settings

* Added click to requirements

* Removed useless file

* Squashed commit of the following:

commit <a class="double-link" href="https://github.com/brainglobe/brainatlas-api/commit/9a33fd7104b1e9066c5c5f0103d96c6c8b02bb75">9a33fd710</a>
Author: Luigi Petrucco <luigi.petrucco@gmail.com>
Date:   Mon Jun 15 16:35:59 2020 +0200

    Fixes for atlas generation scripts

commit 8442627ee7b9df35958e7d8989737c956d0d9503
Author: FedeClaudi <federicoclaudi@protonmail.com>
Date:   Wed Jun 10 23:17:16 2020 +0100

    moved hierarchy to atlas

commit f22ded3be3d89535b1b044665908384695f1a67b
Author: FedeClaudi <federicoclaudi@protonmail.com>
Date:   Wed Jun 10 22:51:36 2020 +0100

    structures

* Adding config tests

* Adding runslow argument for tests

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