campbio / celda / 731
22%
master: 51%

LAST BUILD BRANCH: devel
DEFAULT BRANCH: master
Ran
Jobs 1
Files 41
Run time 5s
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731

Pull #288

travis-ci

web-flow 
Merge 8b0ebabf9 into 166f6d4b2
Pull Request #288: Use SingleCellExperiment object

8080 of 8080 new or added lines in 37 files covered. (100.0%)

2421 of 10699 relevant lines covered (22.63%)

3937.66 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
82.95
 0.78% src/DecontX.cpp
3
86.96
 -13.04% R/matrixSums.R
11
59.26
 R/accessors.R
26
68.42
 14.67% R/decon.R
26
0.0
 -100.0% R/feature_selection.R
27
0.0
 0.0% R/elbow.R
29
0.0
 0.0% R/geneSetEnrich.R
35
0.0
 0.0% R/getDecisions.R
36
18.18
 R/misc.R
41
33.87
 R/celdatosce.R
43
0.0
 R/featureModuleLookup.R
44
86.71
 2.01% R/celda_C.R
47
0.0
 -74.26% R/celda_heatmap.R
47
82.33
 82.33% R/plot_decontx.R
83
71.58
 71.58% R/celdaGridSearch.R
91
24.79
 R/clusterProbability.R
104
0.0
 R/celdatSNE.R
109
26.35
 R/perplexity.R
110
37.08
 37.08% R/model_performance.R
111
0.0
 -25.23% src/cG_calcGibbsProbY.cpp
120
0.0
 R/celdaUMAP.R
120
65.81
 R/simulateCells.R
133
0.0
 -98.31% R/StateHeatmap.R
136
0.0
 R/plotHeatmap.R
139
0.0
 0.0% R/diffExp.R
140
0.0
 R/celdaProbabilityMap.R
142
5.33
 R/loglikelihood.R
146
33.48
 -40.75% R/celda_functions.R
147
44.16
 -53.95% R/initialize_clusters.R
160
0.0
 0.0% R/findMarkersTree.R
224
38.46
 R/factorizeMatrix.R
335
16.95
 -81.7% R/split_clusters.R
355
0.0
 -81.04% R/plot_dr.R
411
0.0
 -91.54% R/celda_G.R
533
6.88
 -83.02% R/celda_CG.R
932
0.0
 0.0% R/recursiveSplit.R
1042
0.0
 -70.22% R/semi_pheatmap.R

Uncovered Existing Lines

Lines Coverage ∆ File
1
0.0
 -70.22% R/semi_pheatmap.R
1
0.0
 -98.31% R/StateHeatmap.R
3
0.0
 0.0% R/findMarkersTree.R
5
33.48
 -40.75% R/celda_functions.R
6
44.16
 -53.95% R/initialize_clusters.R
7
68.42
 14.67% R/decon.R
15
0.0
 -81.04% R/plot_dr.R
19
86.71
 2.01% R/celda_C.R
24
0.0
 -77.42% src/perplexity.c
30
0.0
 -91.54% R/celda_G.R
49
6.88
 -83.02% R/celda_CG.R
57
16.95
 -81.7% R/split_clusters.R
Jobs
ID Job ID Ran Files Coverage
1 731.1 41
22.63
 Travis Job 731.1
Source Files on build 731